Output links in attribute widget doesn’t respect permalink ordering settings.
There are still available urls with the same content (even if you set Flavour, before Colour – http://prntscr.com/mhxoii – it’s not respected):
https://foundthru.com/filter/dogs/black/fish/
https://foundthru.com/filter/dogs/fish/black/
Titles respect that ordering, please do the same with the urls. Please DO NOT add alphabetical ordering like before as it breaks many things.
This has been implemented and tested and will roll with the upcoming release.